rsnapshot is putting backups of different directories/sub directories all into only one directory

I am on CentOS 6.6 and am using rsnapshot 1.3.1-12.

So whenever I use rsnapshot to backup different directories such as /etc or /var it backs them up but in the folder specified to store the backups, it does not keep separate folders for /etc /var, instead it just dumps it all together in the weekly.x folder. I have another rsnapshot configf file that isn't doing this, the difference is that the other config file only has one "backup" entry where this one has multiple. Why is it doing this and how can I fix it?

Here is my rsnapshot config http://pastebin.com/MnmhHiFa